In generation 3 and earlier, Recover has twice as much PP as the other moves.
In games where field moves exist, Softboiled can be used as a field move, paying some of the user's own HP to restore an equivalent amount of HP to one of its teammates. Milk Drink, another similar move, can be used the same way.
Other than those, and the different pool of Pokemon that can learn each of the moves, they're no different.