KANTO
Charizard
The Pidgey line
The Pikachu line
The Growlithe line
Shellder (Kinda...? The shell is gold-ish and the body is black)
The Electabuzz line (the shiny variants are almost identical)
JOHTO
The Hoothoot line
The Ledyba line (it's a bit more orange than yellow, but maybe...?)
Girafarig
Raikou
HOENN
The Poochyena line
Surskit
Ninjask (and kind of the rest of the Nincada line. The black is only really prominent in Ninjask, though)
The Nosepass line
Camerupt
The Spoink line
Claydol
Groudon
Rayquaza
SINNOH
The Kriketot line
The Shinx line
The Sieldon line (The face is really more of a dark-blue, but it's black-ish)
Chingling
The Riolu line
Hippowdon
Lumineon
Gliscor
Arceus
UNOVA
The Tepig line
Stoutland
Swoobat
Tympole and Palpitoad
Sandile and Krokorok
Crustle
Galvantula
Accelgor
KALOS
Aegislash
The Helioptile line
Dedenne
The Pumpkaboo line
ALOLA
The Stufful line
The Sandygast line
Silvally
Turtonator
The Jangmo-o line
Tapu Bulu
That looks to be about all of them. If you want to look through for yourself, this might come in handy.