The Dimensional Scream of the Groudon Statue is generally assumed to be Grovyle, the dialogue being a clip of when you were searching for the locations of the Time Gears as a human in the future, with Grovyle congratulating you on the discovery of the Time Gear.
Wigglytuff appears in the Waterfall Cave Scream as he was the one who discovered Waterfall Cave before the player, and so the objects only hold the memory of him being there.
Finally, in the graduation Scream, I think Wigglytuff is only used to show that the box couldn't be a trap, and was placed there for the graduation.