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My Illogical Theory

Think about it - wouldn't it look a little weird that The Mountain Kalos Dex - the last sub-Pokedex in the Pokedex - doesn't have the legendaries last?

They just want to follow tradition, as putting them lucky last.

As another theory, if I remember correctly Xerneas/Yveltal was trapped and transported to underground Geosenge by Team Flare. So maybe where it actually comes from is a Mountain Kalos area? :o

Hope I helped. :)

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I don't know why you have to put "My Illogical Theory" there all the time. Your theories aren't that illogical.
It's illogical to say it's an illogical answer when it's logical.
exactly
But I'm modest ;_; xD
Lol, your modest nature.